As we’ve discussed previously, churches are not required to withhold taxes for pastors and other clergy. Because of a minister’s dual taxation status, the IRS expects them to pay as if they were self-employed.
How do self-employed people pay taxes?
Through quarterly estimated tax payments. So, as a pastor, you’re required to make quarterly estimated tax payments.
What Are Quarterly Estimated Tax Payments?
Our American tax system is a pay-as-you-go system. Many people don’t realize this because they think they only pay once a year- on April 15. However, most employees are paying all year long, out of every paycheck. The yearly tax return they file is just to check their balance for over- or under-payments.
The IRS doesn’t want to wait a year to get their money. They want it immediately, which is why most employees are subject to mandatory tax withholding. Self-employed people, though, don’t have an employer to withhold their taxes for them. And many of them do not pay themselves a regular paycheck from which taxes could be withheld. Therefore, the IRS set up the quarterly estimated tax payment system.
Self-employed people (or those treated as if self-employed, like clergy) are required to pay taxes four times a year with IRS Form 1040-ES. These payments include federal income tax and SECA taxes, which are the Social Security and Medicare taxes.
When Are Quarterly Estimated Tax Payments Due?
While quarterly payments are due four times a year, the year is not divided up equally. This is when each payment is due and what each payment covers:
If the due date falls on a weekend or holiday, it gets pushed back to the next business day. For example, in 2028, January 15 is a Saturday, so the payment is due the next business day, Monday, January 17, 2028.
How Should Pastors Calculate Quarterly Estimated Tax Payments?
IRS Form 1040-ES includes a worksheet for calculating estimated payments. However, it gets complicated. Use that if you want something comprehensive and exact. Otherwise, I will explain the basics of calculating your estimated payments.
Calculating Estimated Income Tax Payments
I’ll start by addressing income taxes, because that applies to all pastors, whether or not you’ve opted out of Social Security. If you’ve opted out, this is all you have to worry about. If not, you need to read the next section as well.
The basic way to figure estimated taxes is to take your expected salary (not counting housing allowance) and subtract expected deductions (standard or itemized, plus half of SECA taxes due) to find your expected taxable income.
Expected Salary (excluding housing allowance) – Expected Deductions = Expected Taxable Income
Then look up the tax on that expected taxable income in the 2026 tax rate schedules below (taken from IRS Form 1040-ES).
That is your expected annual tax. You can lower it by any tax credits you expect to receive, such as the child tax credit. Once you’ve accounted for credits, you can just divide it so that it represents the quarter you are paying. September’s estimated payment covers 3 months (June, July, and August), so the equation would look like this:
Estimated Annual Tax (Less Expected Tax Credits) * 3/12 = Quarterly Tax Payment Due on September 15
If you have irregular income, you should look back at just the months in question. Take your income from those months, subtract the time period’s portion of your expected annual deduction (for example, 3/12 of the standard deduction), and use that amount to figure your tax for the quarter.
Remember that your housing allowance is exempt from federal income taxation, so it should not be included in these calculations!
Pastors Participating In Social Security
If you chose to remain in the Social Security system, then you have to pay SECA taxes on top of your income taxes. Remember that your housing allowance is not exempt from SECA taxes, so you will need to include it in your total income. If you live in a parsonage, you also have to include the fair market rental value of the parsonage in your total income.
Your SECA taxes are 15.3% of 92.35% of your income (capped at $184,500 in 2026). For this September’s payment, you would calculate it as:
Income (including housing or parsonage allowance) * 0.9235 * 0.153 = Annual SECA Taxes
Annual SECA Taxes * 3/12 = SECA Taxes Due This Quarter
If your total income exceeds $184,500, then your SECA taxes are 15.3% of 92.35% of income up to that amount plus 2.9% above that amount.
Your quarterly estimated tax payment is comprised of both your estimated income taxes due and SECA taxes.
How To Avoid Penalties
If you don’t pay your estimated taxes, you will be penalized by the IRS. You can also incur penalties if you underpay. Sometimes it can be hard to estimate taxes, so the IRS created “safe harbor” calculations. If you use these calculations you will not be penalized, even if you underpay. You should be safe from penalties if you:
- Expect to owe less than $1,000
- Pay 100% of your previous year’s tax liability if your adjusted gross income is under $150,000. If it is over that, you have to pay 110% of the previous year’s tax liability.
- Pay within 90% of your actual tax liability for the year
Another Way To Do It
Making quarterly estimated tax payments can be a real pain. If you don’t want to have to deal with this, ask your church to withhold taxes for you. While they aren’t required to, they are allowed to. They can’t pay your SECA taxes for you, but they can withhold enough to cover your SECA taxes at the end of the year. This article explains how it works.
Another way to avoid paying quarterly estimated taxes is by having another employer withhold more. If you or your spouse is an employee of a secular company that withholds taxes, just have them withhold enough to cover your pastoral income. Changing your withholdings is as simple as filling out a Form W-4 and filing it with the company’s Human Resource department.
