What To Do If Your Clergy Housing Allowance Exceeds Your Actual Expenses

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As we all know, nothing went quite as expected in 2020. In fact, for most of us, nothing went anywhere close to expected! Maybe you were planning on doing some work on your home and things got shut down because of COVID-19. Perhaps you were planning on spending some money on items for your home, but COVID-19 made you tighten your budget. Or things just didn’t go according to plan and it had nothing to do with COVID-19! (But we’re blaming everything on COVID-19 these days, right?)

While altering your plans is always annoying, it is a bit more significant for pastors when it comes to housing expenses. At the beginning of the year, you have to carefully estimate your yearly housing expenses in order to avoid paying taxes on them with the clergy housing allowance. You meticulously calculate your anticipated rent, utilities, home purchases, and big projects.

And then something like this happens. The whole world hits pause. Your plans get tossed by the wayside and your expenses were lower than the housing allowance that your church gave you. You should have been paying taxes on some of that money and you didn’t.

Now, what do you do?

Excess Housing Allowance Is Taxable Income

What the housing allowance is is a provision that allows you to exclude your housing expenses from gross income for federal tax purposes. At the beginning of the year, you tell your church how much of your income you plan to use for housing and that amount is not reported to the IRS as income.

However, if you don’t use it all for housing by the end of the year, you need to let the IRS know and pay federal income taxes on the rest. Let’s see what that looks like in real life.

Say your church pays you $60,000 a year. You designate $25,000 of that as a housing allowance so your church only reports to the IRS that you had $35,000 of taxable income.

If you only spend $22,000 on housing for the year, you have an extra $3,000 that you should have paid taxes on but didn’t. You need to add that extra $3,000 of housing allowance back into your income and pay taxes on it. Not doing so is tax evasion and will get you into trouble if the IRS audits you.

How To Report Your Excess Housing Allowance

So, how do you report it as income in order to pay taxes?

Add it in with your other wages on line 1 of your Form 1040. Then, on the dotted line next to it, write, “Excess allowance” and the amount. Here is an example:

Picture of Form 1040 with "Excess Housing Allowance 3,000" written on line 1 for clergy.

Yes, it is as simple as that. Now it is added in with your wages for when your taxes are calculated.

That’s how to include it for income taxes, but what about SECA, your Social Security and Medicare taxes? Well, you don’t have to worry about that at all. Because you always have to pay SECA taxes on your housing allowance, claiming too much won’t make any difference in what you have to pay. You are already paying the full amount on Schedule SE.

What You Can Do Differently For Next Year

Now, while ending the year with excess housing allowance may have made your heart skip a beat and worried you a bit, it wasn’t that bad, was it? With such an easy way to correct it, it’s often better to err on the side of claiming too large an allowance than too small.

Too many pastors don’t claim a large enough housing allowance and end up needlessly paying extra taxes. The best way to avoid that and limit your tax bill is by overestimating your yearly housing allowance.

There is one thing I need to note, though. There is a potential downside to overestimating your housing allowance.

Things To Watch Out For

Your housing allowance lowers your gross income for federal tax purposes and there are some important things that are limited by your gross income. The biggest one that most pastors need to watch out for is the refundable portion of the Child Tax Credit. Claiming too much of a housing allowance can actually limit the amount of money you can get. This article explains why. Contributions made to retirement accounts are also calculated and limited based on income. There is a chance that by overestimating your housing allowance you could negatively affect the amount of money that you can save for retirement.

Make sure to look into those two things before blindly following my suggestion that overestimating is better than underestimating. Remember, just because you read something on the internet doesn’t mean it’s necessarily best for your unique situation.

Now that you’ve fixed last year’s housing allowance, what about this year’s? Is it already approved by your church with an accurate estimate or overestimate?

If not, you’d better get on it! The housing allowance cannot be used retroactively, so every day you procrastinate is another day that you are paying taxes on your housing allowance unnecessarily. If you need to make a change, make one. The IRS does not limit the amount of changes you make to your housing allowance or the timing of them, as long as they are done proactively.

Purchase The Complete Guide to the Clergy Housing Allowance by Amy Artiga
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21 Responses
  • Rodney
    August 14, 2019

    What if you are a bi-vocational pastor and your housing allowance is less than your actual expense? Should you pay social security tax on your housing allowance?

    • Amy
      August 16, 2019

      Rodney, if you have not opted out of Social Security then you always have to pay Social Security taxes on your housing allowance. If your housing allowance was less than your actual expenses, then you can request an increase in housing allowance to accommodate that. However, the housing allowance is never retroactive, so it would not apply to any expenses that you have already incurred, only those in the future. Also, the housing allowance can only come from your ministerial wages, so if they are less than your actual housing expenses, that is the most you can claim.

  • Robert Franseen
    March 1, 2021

    What if you retire in March and have a 403b that provides for retired pastors to claim housing allowance. Since you are no longer working at the church how do you claim housing allowance?

    • Terry
      March 1, 2021

      The company should designate it just like your church did. They should be able to know since it is set up that way.

    • Amy
      March 2, 2021

      Robert, if it is a denominational pension board, then they can designate the housing allowance just as your church did. Otherwise, you can have the church designate it and instruct the plan administrator to distribute it as such. Sometimes retirees have all of their 403(b) distributions in perpetuity (forever) designated as a housing allowance so that it only has to be designated once. Then, they just add back any excess to taxable income at the end of the year. If your distributions are close to your housing numbers, that can work well.

  • Joy Chappell
    March 1, 2021

    Shouldn’t you aim for your designated allowance to be a bit more than actual expenses? And withhold or pay estimates accordingly. It is better that some designated become federal taxed than for the pastor to have lost the tax savings for setting the allowance too low. When housing expenses are greater than the designated allowance the Pastor loses the Federal tax free status of that money spent on those housing expenses.

    • Amy
      March 2, 2021

      That’s exactly right, Joy. Doing it that way is wise for most people, unless the refundable Additional Child Tax Credit is affected. In those situations, you have to run several calculations in order to optimize your tax benefits.

  • Charles Mahan
    March 15, 2021

    Congratulations on passing the CFP exam!

    • Amy
      March 15, 2021

      Thank you, Charles!

  • Michael Walker
    March 30, 2021

    To clarify, let’s say a church pays a pastor $60,000 and he designated $25,000 as housing allowance. If he only uses $22,000, but never adjusts, he’ll receive a w-2 that states his salary was $35,000, his housing allowance was $25,000.

    If you simply add the $3,000 to income without lowing the housing allowance, you’ll end with a salary of $38,000 and a housing allowance of $25,000 (assuming you have to report the housing allowance that your organization gives you on your w-2). Because of that, you’ll end up paying more taxes than necessary (since some portion of your taxes are based on the total, which is now $63,000). Is that correct? Is he essentially on the hook for more taxes due to his mistake of failing to lower the housing allowance prior to December 31?

    • Amy
      March 31, 2021

      Michael, when the $3k is added back to income it lowers your housing allowance (to your actual eligible expenses) to $22k. The IRS will see that while $25k was reported as housing allowance, $3k was added back to taxable income as excess allowance and do the math. You still only pay Social Security taxes on the $60k that you actually got. The only difference is that you pay income taxes on $38k instead of $35k, which is the same as it would have been if you had estimated your expenses perfectly. Does that make sense?

      • Michael Walker
        April 1, 2021

        It does! Thank you.

        And it looks like accounting software (turbotax, at least) does make that change automatically.

  • Jen
    May 7, 2021

    If you’re let go as a pastor from a church mid-year and had received a housing allowance at the beginning of the year, can expenses from the entire year (even after termination) be counted towards that housing allowance, or are expenses only limited to those incurred during the employment period?

    • Amy
      May 7, 2021

      Jen, your qualified expenses are limited to those incurred during your employment. Once your pastoral job ends, so does your housing allowance.

  • Pete
    April 9, 2024

    As a self-employed missionary contractor, can excess MHA allowance be counted as business income on Schedule C (thereby also qualifying for QBI deduction), instead of a wage on line 1 of 1040?

    • Amy
      April 15, 2024

      If the income would have been 1099 if it weren’t housing allowance, then it should be included on Schedule C. If it would have been W-2 income, then it would be on line 1 of the 1040.

  • LEO MENDEZ
    April 12, 2024

    If I received $36,000 for housing allowance, do I need to report the total amount? Am I allowed to reduce the total amount by applying write offs (expenses related to my ministry)?

    • Pete
      April 12, 2024

      Hey Leo,
      My previous post has gone unanswered here, but I did get a response from FreeTaxUSA that may give clarity to your situation. According to FreetaxUSA, “The IRS states the following, ‘If your housing allowance exceeds the lesser of your reasonable compensation, the fair rental value of the home, or your actual expenses directly relating to providing the home, you must include the amount of the excess in income.’ Reference: https://www.irs.gov/taxtopics/tc417# … this cannot be included as self employment income, but automatically gets included as other earned income on line 1h of form 1040″

    • Amy
      April 15, 2024

      I am not completely sure, but I do not believe you can apply write-offs to the housing allowance because the money can’t be used for two things at once – housing expenses and whatever you’re writing off. I am open to being corrected if there is a CPA who knows better than I do.

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